Skills

Statistics

100%

R

100%

Markdown, Shiny

100%

Photography

60%

Tennis

60%

Publications

Notation: †: Co-first author

. scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets. In PNAS, 2019.

Project Github Paper Poster

. scDC: single cell differential composition analysis. In BMC Bioinformatics, 2019.

Github PDF

. Evaluating stably expressed genes in single cells. In Giga Science, 2019.

PDF Shiny Poster

. Impact of similarity metrics on single-cell RNA-seq data clustering. In Briefings in Bioinformatics, 2018.

PDF

Preprints

Notation: †: Co-first author

. CiteFuse enables multi-modal analysis of CITE-seq data. In bioRxiv, 2019.

Github PDF

. Investigating higher order interactions in single cell data with scHOT. In bioRxiv, 2019.

PDF

. scClassify: hierarchical classification of cells. In bioRxiv, 2019.

Github PDF

Projects

*

Hierarchical classification of cells

scDC

Single cell differential composition analysis

Integration of multiple single-cell transcriptomics datasets leveraging stable expression and pseudo-replication

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